The ClinGen Evidence Repository is an FDA-recognized human genetic variant database containing expert-curated assertions regarding variants' pathogenicity and supporting evidence summaries. [Disclaimer]
  • Gene label mismatch: MAP2K2 vs undefined
  • Gene obtained from curated document aligns with the Allele Registry but not with ClinVar data
  • No CSPEC computed assertion could be determined for this classification!


Variant: NM_030662.4(MAP2K2):c.401A>G (p.Tyr134Cys)

CA180890

177868 (ClinVar)

Gene: MAP2K2
Condition: RASopathy
Inheritance Mode: Autosomal dominant inheritance
UUID: 06d3c00a-69eb-4612-b456-062e6ac0a274
Approved on: 2024-12-03
Published on: 2025-03-31

HGVS expressions

NM_030662.4:c.401A>G
NM_030662.4(MAP2K2):c.401A>G (p.Tyr134Cys)
NC_000019.10:g.4110558T>C
CM000681.2:g.4110558T>C
NC_000019.9:g.4110556T>C
CM000681.1:g.4110556T>C
NC_000019.8:g.4061556T>C
NG_007996.1:g.18571A>G
ENST00000394867.9:n.840A>G
ENST00000687128.1:n.840A>G
ENST00000262948.10:c.401A>G
ENST00000262948.9:c.401A>G
ENST00000394867.8:c.110A>G
ENST00000599345.1:n.598A>G
NM_030662.3:c.401A>G
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Likely Pathogenic

Met criteria codes 5
PS4_Moderate PM2_Supporting PS3_Supporting PP3 PM1
Not Met criteria codes 4
BS1 BS3 BP4 BA1

Evidence Links 0

Expert Panel

Criteria Specification Information

Criteria Specification: ClinGen RASopathy Expert Panel Specifications to the ACMG/AMP Variant Interpretation Guidelines for MAP2K2 Version 2.3.0

Criteria Specification Approval History
Criteria Specifications for this VCEP
Evidence submitted by expert panel
RASopathy VCEP
The c.401A>G variant in the MAP2K2 gene is a missense variant predicted to cause substitution of tyrosine by cysteine at amino acid 134 (p.Tyr134Cys). This variant is absent from gnomAD v2.1.1 (PM2_Supporting). The computational predictor REVEL gives a score of 0.966, predicting a damaging impact on protein function (PP3). This variant is in a location that has been defined by the ClinGen RASopathy Expert Panel to be a critical functional domain of MAP2K2 (PM1, AA 128-138). This variant has been identified in at least 4 patients with RASopathy (PS4_Moderate; PMID: 18413255, 18039235, 21062266, 23885229). ERK phosphorylation assays showed that this variant led to increased phosphorylation compared to wild-type (PS3_Supporting; PMID: 17981815, 18413255). In summary, this variant meets criteria to be classified as likely pathogenic for autosomal dominant RASopathies based on the ACMG/AMP criteria applied, as specified by the ClinGen RASopathy Variant Curation Expert Panel: PS4_Moderate, PM1, PS3_Supporting, PM2_Supporting, PP3 (Specification Version 2.3, 12/3/2024)
Met criteria codes
PS4_Moderate
This variant has been identified in at least 4 patients with RASopathy (PMID: 18413255, 18039235, 21062266, 23885229).
PM2_Supporting
This variant is absent from gnomAD v2.1.1
PS3_Supporting
ERK phosphorylation assays showed that this variant led to increased phosphorylation compared to wild-type (PS3_Moderate; PMID: 17981815, 18413255)
PP3
The computational predictor REVEL gives a score of 0.966, predicting a damaging impact on protein function
PM1
This variant is in a location that has been defined by the ClinGen RASopathy Expert Panel to be a critical functional domain of MAP2K2 (PM1, AA 128-138)
Not Met criteria codes
BS1
This variant is absent from gnomAD v2.1.1
BS3
In vitro functional studies provide some evidence that the p.Tyr134Cys variant may impact protein function
BP4
The computational predictor REVEL gives a score of 0.966, predicting a damaging impact on protein function
BA1
This variant is absent from gnomAD v2.1.1
Curation History
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